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R for trial and model-based cost-effectiveness analysis: workshop

July 9, 2019 @ 9:30 am - 4:45 pm BST


Background and objectives

It is our pleasure to announce a workshop and training event on the use of R for trial and model-based cost-effectiveness analysis (CEA). This follows our successful workshop on R for CEA in 2018.

Our event will begin with a half-day short course on R for decision trees and Markov models and the use of the BCEA package for graphical and statistical analysis of results; this will be delivered by Gianluca Baio of UCL and Howard Thom of Bristol University.

This will be followed by a one-day workshop in which we will present a wide variety of technical aspects by experts from academia, industry, and government institutions (including NICE). Topics will include decision trees, Markov models, discrete event simulation, integration of network meta-analysis, extrapolation of survival curves, and development of R packages.

We will include a pre-workshop virtual code challenge on a problem set by our scientific committee. This will take place over Github and a Slack channel with participants encouraged to submit final R code solutions for peer review on efficiency, flexibility, elegance and transparency. Prizes will be provided for the best entry.

Participants are also invited to submit abstracts for potential oral presentations. An optional dinner and networking event will be held on the evening of 8th July.

Registration is open until 1 June 2019 at

To submit an abstract, please send it to with the subject “R for CEA abstract”. The word limit is 300. Abstract submission deadline is 15 May 2019 and the scientific committee will make decisions on acceptance by 1st June 2018.

Preliminary Programme

Day 2: Workshop. Tuesday 9th July.

  • 9:30-9:45. Howard Thom. Welcome
  • 9:45-10:15. Nathan Green. Imperial College London. _Simple, pain-free decision trees in R for the Excel user
  • 10:15-10:35 Pedro Saramago. Centre for Health Economics, University of York. Using R for Markov modelling: an introduction
  • 10:35-10:55. Alison Smith. University of Leeds. Discrete event simulation models in R
  • 10:55-11:10. Coffee
  • 11:10-12:20. Participants oral presentation session (4 speakers, 15 minutes each)
  • 12:20-13:45. Lunch
  • 13:45-14:00. Gianluca Baio. University College London. Packing up, shacking up’s (going to be) all you wanna do!. Building packages in R and Github
  • 14:00-14:15. Jeroen Jansen. Innovation and Value Initiative. State transition models and integration with network meta-analysis
  • 14:15-14:25. Ash Bullement. Delta Hat Analytics, UK. Fitting and extrapolating survival curves for CEA models
  • 14:25-14:45. Iryna Schlackow. Nuffield Department of Public Health, University of Oxford. Generic R methods to prepare routine healthcare data for disease modelling
  • 14:45-15:00. Coffee
  • 15:00-15:15. Initiatives for the future and challenges in gaining R acceptance (ISPOR Taskforce, ISPOR Special Interest Group, future of the R for CEA workshop)
  • 15:15-16:30. Participant discussion.
  • 16:30-16:45. Anthony Hatswell. Close and conclusions



Anatomy Building
Gower Street
London, WC1E 6XA United Kingdom

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